2022 EMSL Summer School
July 18 - 21, 2022
Overview
Sessions focus on advanced visualization, analysis, and modeling tools for soil analysis. Seminars also covered the National Microbiome Data Collaborative (NMDC) project.
EMSL Summer School 2022, Day One: Introductions, Orientations, and Metadata with the NMDC
Day one presentations cover introductions to Summer School, EMSL's national Molecular Observation Network (MONet) project, and DOE's National Microbiome Data Collaborative (NMDC) project.
Introduction to EMSL's Molecular Observation Network Project
Advancing Microbiome Research with the National Microbiome Data Collaborative
An Introduction to Multi-Omic Peat Data
The National Microbiome Data Collaborative Metadata Standards
EMSL Summer School 2022, Day Two: Know Your Metagenome
Day two presentations cover workflow for processing metagenomic data and data structures for metagenome assembly, gene cells, and annotation.
Soil Metagenomics—Whole Microbial Community Characterization
Introduction to Environmental Metagenomics
What's in a Metagenome?
NMDC Standardized Workflows and Metagenomics Pipeline
EMSL Summer School 2022, Day Three: Know Your Organic Matter
Day three presentations cover the strengths and limitations of instrumentation for collecting the organic matter data, understanding the data structures, and assigning molecular formulas to spectra.
Soil organic matter – gaps in knowledge and challenges to characterization
Introduction to natural organic matter characterization with ultra-high resolution mass spectrometry
Introduction to data processing workflows for natural organic matter and metabolomics
EMSL Summer School 2022, Day Four: Statistics and Visualization
Day four presentations cover cross-sample comparisons and multi-omic analysis including differential abundance, ordination plots and multivariate analysis, Van Krevelen diagrams, and inferred biochemical transformations.
